O/E - On an order with multiple lines, how to I indicate that one line is not able to be discounted if customer terms show a discount?

We use O/E to record and ship orders. The invoice is automatically generated when we post the shipment. The problem is, if the customer (payment) Terms offer a discount, this discount is also calculated on the Misc. line items in the order (e.g. shipping charges).  We don't want to discount misc. line items (shipping), but i don't see how to change that in O/E before posting the shipment and generating the invoice.

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